Award details

High pressure & low temperature study of the mechanism of enzymatic hydrogen tunnelling: promoting motions vs multiple kinetically distinct substates

Reference	BB/E00833X/1
Principal Investigator / Supervisor	Professor Nigel Scrutton
Co-Investigators / Co-Supervisors	Professor David Leys
Institution	The University of Manchester
Department	Life Sciences
Funding type	Research
Value (£)	86,082
Status	Completed
Type	Research Grant
Start date	01/04/2007
End date	31/05/2008
Duration	14 months

Abstract

The hallmarks of catalysis by enzymes are selectivity, specificity and speed. However, despite their central role, the physical basis of the enormous catalytic power of enzymes is not well understood.Initially, tunneling was treated through the introduction of a tunneling correction to transition-state theory. However, the examination of the temperature dependence of the kinetic isotope effects of several enzymatic hydrogen transfer reactions has led to a collapse of the semi-classical model for hydrogen tunnelling and new models were developed to explain these observations such as environmentally coupled tunnelling in which protein motions are proposed to drive hydrogen tunneling. It is central to our understanding of enzyme catalysis to test these models further and contrast them with potential alternatives. Especially for the case of temperature dependent KIEs, which are consistent with a model where an active promoting motion leads to a compression of the tunneling barrier in the reactive state and enhanced tunneling, alternative models such as multiple conformational states of the enzymes must be examined experimentally. Based on sound preliminary data on the reactions mechanisms of dihydrofolate reductases (DHFR) we propose here to expand the reaction conditions used to study hydrogen tunneling to high pressure and low temperatures. Under these conditions, predictions made by the environmentally coupled tunnelling model can be tested and contrasted with a model based on a statistical population of kinetically distinct substates of DHFR. This work will provide much needed new insight into the mechanism underlying the catalytic events during enzymatic hydrogen transfer reactions.

Summary

All reactions in living systems are mediated and speeded by protein catalysts. The rate accelerations achieved by Nature's catalysts are often as high as 20 orders of magnitude. An understanding of the mechanisms by which enzymes accelerate chemical reactions is of central importance for a wide range of disciplines and industries. In general terms the rate of every reaction is increased when the activation energy for this reaction, which separates the reactants from the products, is reduced. It has recently become clear that particles like electrons, protons, hydrogen atoms and hydride ions can also tunnel through this activation barrier thereby avoiding the need to climb the activation barrier. The mechanism by which these tunnelling reactions occur has been the subject of much debate. Several groups have used a theoretical model to explain the experimentally observed dependence of the reactions rates on temperature. This model proposes that the dynamic motions of the enzyme couple to the actual reaction and thereby promote it. Such a model could explain many experimental results. However, there are still many controversies and it is important to test this model. In addition, we and others have proposed alternative explanations which are based on the observations that many enzymes do not have only one rigid and well defined conformation, but are made up of an ensemble of similar but structurally distinct substates which have different catalytic properties. This is a conceptionally different and more classical view of enzymes which should allow the explanation of many observations. The work proposed here will not only shed light on a fundamental problem of physical sciences, but should eventually lead to the design of artificial catalysts, which display activity in non-physiological environments, and of enzyme inhibitors with many benefits in health care and agriculture.

Committee	Closed Committee - Biomolecular Sciences (BMS)
Research Topics	Industrial Biotechnology, Structural Biology
Research Priority	X – Research Priority information not available
Research Initiative	X - not in an Initiative
Funding Scheme	X – not Funded via a specific Funding Scheme

Associated awards:

BB/E008380/1 High pressure & low temperature study of the mechanism of enzymatic hydrogen tunnelling: promoting motions vs multiple kinetically distinct substates

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