Award details

Development of a web-based resource for the Macrophage Research Community

Reference	BB/G022607/1
Principal Investigator / Supervisor	Professor David Hume
Co-Investigators / Co-Supervisors	Professor Tom Freeman
Institution	University of Edinburgh
Department	The Roslin Institute
Funding type	Research
Value (£)	312,980
Status	Completed
Type	Research Grant
Start date	09/11/2009
End date	08/02/2013
Duration	39 months

Abstract

The web site www.macrophages.com is an established resource that contains a large number of resources dealing withing macrophage biology, including the BioInfoWeb, which links into massive transcriptional network data sets generated in the PIs laboratory and through the FANTOM Consortium and Genome Network Project. This proposal aims to expand macrophages.com into community web site, that provides new tools to access genome-scale macrophage data in a user-friendly and intuitive way, especially including data generated in multiple different vertebrate species. This data will be integrated with developing pathway analysis tools, and with data sets generated by the international macrophage biology community. The overall structure of the database will be centred around individual genes, enabling members of the community to readily access quality curated information about any gene that relates to its overall function, and to its specific roles and regulation in macrophages.

Summary

Macrophages are large white blood cells that are also found in substantial numbers in every tissue of the body. Their numbers are increased still further in response to inflammatory stimuli. They are essential in many aspects of normal physiology and wound repair, and they act as a first line of defence against pathogenic organisms, coordinate both the immune responses to infection. For this reason, their biology is of very broad interest in the biomedical, pharmaceutical, biotechnology and animal production industries and there is a large community of scientists who study them. The past 10 years has seen a massive increase in the amount of information about macrophages, especially concerning the ways that different genes are controlled in order to generate the many different functions of these cells. Genome-scale information is very difficult for individual scientist to access and comprehend in ways that enable them to develop and test hypotheses. This proposal aims to establish a web site that will serve as a community resource for the international macrophage biology community. It is what is called a web2.0 resource, in which the community participates actively in generating the resource, and in communicating through it. It will be populated with convenient tools that enable visualisation and analysis of large sets of data relating to genes that function in macrophages; data contributed by participating research groups.

Committee	Closed Committee - Genes & Developmental Biology (GDB)
Research Topics	Immunology, Technology and Methods Development
Research Priority	X – Research Priority information not available
Research Initiative	Bioinformatics and Biological Resources Fund (BBR) [2007-2015]
Funding Scheme	X – not Funded via a specific Funding Scheme

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