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Evolutionary Dynamics Underlying Species Diversification

Reference	BB/G009325/1
Principal Investigator / Supervisor	Professor Enrico Coen
Co-Investigators / Co-Supervisors
Institution	John Innes Centre
Department	Cell and Develop Biology
Funding type	Research
Value (£)	1,619,943
Status	Completed
Type	Research Grant
Start date	01/05/2009
End date	30/04/2014
Duration	60 months

Abstract

This project aims to integrate molecular, population genetic, computational and theoretical approaches to provide a detailed quantitative understanding of mechanisms underlying species diversity. Natural variation at three key loci controlling flower colour, ROS EL and SULF, will be characterised at various temporal, spatial and genetic scales. At the smallest spatial and temporal scale, fitness and gene flow will be directly measured in a hybrid zone population segregating for different morphs. This will be achieved at individual resolution by exploiting high throughput methods for DNA fingerprinting and image analysis. These findings will be integrated with estimates of selection and dispersal based on marker studies at a medium population scale. Other loci at which selection may be acting at the hybrid zone will also be identified. The key flower colour loci will be compared in different species to determine the differences in sequence and expression that underlie species differences. By looking at closely linked markers we will also determine the extent to which selective sweeps have occurred at these loci. Theoretical frameworks will be developed to determine which fitness landscape topography provides the best explanation for all of the data. General tools, such as a physical map, will also be established to aid with gene and marker isolation. A database, ANTSPEC, will also be created to facilitate coordination, analysis, access and archiving of the data, methods, maps (genetic and physical), materials (e.g. BAC libraries), software and theories. Researchers will be trained with a novel combination of interdisciplinary skills. The project will therefore help forge a new and integrated understanding of the molecular and genetic mechanisms that underpin evolution and diversity and provide training and expertise in this interdisciplinary research area.

Summary

Biological diversity is evident at many different scales, from variation between individuals in a population to the distinctions between different species and other taxonomic groupings. A major aim of evolutionary biology is to understand the connections between these different levels of variation. All taxonomic distinctions ultimately trace back to genetic differences between individuals in populations. However, it is unclear how such genetic variation has led to the evolution of diverse phenotypes over time. What, for example, causes populations to diverge and form new species and what constrains the paths that evolution may take? Answering such questions has been difficult because the genes underlying species differences are often poorly defined and because the details by which processes like natural selection and genetic drift have led to fixation of particular versions or alleles of these genes remain unclear. Recent advances in molecular and evolutionary genetics make it possible to address these issues in a fully integrated way for the first time. In particular, genes controlling phenotypic differences between species can now be isolated and studied at a whole series of scales, from individual pedigrees to populations and species. The variation in and around these genes can be readily determined for DNA sequences that are few bases to millions of bases apart. By measuring how such genetic variation is distributed over different geographical ranges and periods of separation, estimates can be obtained for the rates at which genes flow from place to place, and the extent to which natural selection or random fluctuations (genetic drift) influence evolutionary change. Moreover, genetic interactions can be studied by applying these methods to several genes in parallel. By integrating all of this information, models from the individual to species level may be constructed and evaluated, providing a coherent framework for understanding the evolution of diversity. Taking such an integrated approach requires a biological system with several features. It should have well developed molecular genetics, exhibit genetically tractable diversity within and between species, be convenient for field studies and allow interactions between multiple genes to be studied. One of the few systems that currently meets all of these requirements is flower colour variation in Antirrhinum (snapdragon). We propose to exploit this system to study the evolution of diversity at a range of temporal, spatial and genetic scales. This will involve characterising variation around three key flower colour genes that are known to be important for inter-specific differences. At the smallest temporal scale, we will determine the pattern of gene flow from one generation to the next in a region where species meet and hybridise. This will allow the fitness (i.e. the number of offspring) of different gene combinations to be measured in the field. Over the medium scale, we will survey fluctuations in a range of genetic markers to give longer term estimates of gene flow and the intensity of natural selection. At the largest temporal scale, we will compare variation in DNA sequence and function of each gene in several species. This should throw light on how distinct alleles arose and how quickly they spread. Appropriate theories and models will be developed for each scale of analysis. These will then be integrated to arrive at an overall framework that spans variation from the individual to species level. In addition to providing a deeper understanding of the origins of biodiversity, the project will provide multidisciplinary training for several young researchers and promote a more integrated understanding of evolutionary and developmental biology.

Committee	Closed Committee - Genes & Developmental Biology (GDB)
Research Topics	Plant Science
Research Priority	X – Research Priority information not available
Research Initiative	Longer and Larger Grants (LoLas) [2007-2015]
Funding Scheme	X – not Funded via a specific Funding Scheme

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