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A novel multi-scale multiparametric technology for high speed fluorescence imaging of excitable tissues

Reference	BB/F004834/1
Principal Investigator / Supervisor	Dr Peter Kohl
Co-Investigators / Co-Supervisors	Dr Gil Bub
Institution	University of Oxford
Department	Physiology Anatomy and Genetics
Funding type	Research
Value (£)	511,818
Status	Completed
Type	Research Grant
Start date	01/01/2008
End date	31/12/2010
Duration	36 months

Abstract

A mechanistic understanding of cardiac and neuronal tissue function ideally requires prolonged mapping of multiple parameters at both the (sub)cellular and multicellular levels simultaneously. Present technologies are not, however, well suited for high speed, high resolution imaging with the sensitivity and dynamic range required for these tissues. The here proposed new imaging system contains a high speed digital mirror device (DMD), set so that i) light flux can be controlled on a pixel by pixel bases (allowing optimal S/N and low phototoxicity), and ii) regions of the detector can be kept completely dark (permitting rapid charge shifting for higher frame rates). Custom readout schemes allow high speed imaging of either a small region of interest, or the entire field of view at reduced resolution (via pixel level binning). The proposed high speed EMCCD detector can continuously image alternating small and large fields of view, so that image pairs are captured within a ms, for multi-space scale imaging. In addition, the DMD projects 16 gray levels per ms on the sample, normalizing illumination levels, which increases the dynamic range of the system by 4 bits. The increased dynamic range permits higher EMCCD gain levels, improving S/N for weakly fluorescent samples. Near-simultaneous muli-parametric imaging for a sample loaded with two dyes, using a conventional filtered source and an ultra-bright LED (as excitation sources). Combining conventional and LED sources allows a wider range of exictation wavelengths, as only a handful of ultrabright LED exist. The LED is rapidly toggled, so that alternating frames are excited by a different combination of the LED and the filtered source, and emission is recovered by spectral unmixing techniques. Thus, the combination of LED, DMD, and EMCCD technologies into one system results in a novel technological platform that can address previously ill posed systems levels questions in excitable cell networks.

Summary

Many biological processes involve interactions over a wide range of space scales. Examples include the generation of brain activity by interactions of many neurons, or the role of individual myocytes in generating the heart beat. Cell activity depends on complex interactions of multiple parameters, which we would like to monitor simultaneously, to understand their role in system's behaviour. Heart disease is an area where these considerations are particularly critical. A heart cell (just about visible in a microscope and, hence, said to be of 'microscopic' dimensions) can generate electrical activity, which is passed on to neighbouring cells, resulting in the formation of an electrical wave front that traverses the whole heart ('macroscopic' behaviour). Irregular activation of a few cells, often caused by malfunctions in the even smaller ion-handling proteins (they are of 'sub-microscopic' size and can not themselves be seen by microscopy), may cause disruptions of organ level function. In turn, changes in the macroscopic activity affect individual cells and ion channels, complicating the interaction between (sub-)microscopic and macroscopic events. Any mismatch in this interaction can manifest itself as a heart rhythm disturbance, which is the major cause of incapacitation and death in the developed world. Given the complexity of interactions, the study of underlying mechanisms has remained difficult. At the present time, technologies for measuring patterns of activity in excitable tissues (like the heart) are limited by tissue-imposed constraints. Cell activity is very fast (requiring frame rates that are fifty times faster than what the human eye can detect), and the usable optical signal is rather faint (undetectable by the human eye, and requiring super-sensitive detectors). Further, cell activity is measured using fluorescent probes, which decode relevant information as a small 'ripple' on top of a large background signal. This necessitates the use of detector systems that divide light intensity into thousands of grey levels (so that very small differences in absolute intensity can be resolved). This is largely achieved using detectors with a low spatial resolution (as low as 16x16 pixels). Although low resolution detectors can be used for many experimental problems, a significantly higher resolution would be needed to study the relationship between microscopic (individual cell) and macroscopic (whole heart) activity in one and the same sample. This proposal shifts the focus from improving the detector alone, to changing the ways in which the biological sample is illuminated, and in which fluorescent light is collected. By precisely varying excitation light localization, timing, intensity and wavelength, on a pixel by pixel basis, it is possible to dramatically increase the performance of system. The core of the new imaging technology is a digital mirror device (DMD), commonly used in movie projection systems (DMDs contain a million tiny mirrors whose projection angle can be manipulated a thousands of times per second). The DMD allows precise control of the light intensity that reaches the biological sample, as well as the location of image on the detector. By alternating between imaging small (cells) and large fields of view (large tissue areas), a multi-scale image can be obtained at high speed. This technology is coupled to a novel oscillating illumination source that allows sequential capture from different fluorescence probes in the same sample, allowing multi-parameter measurements. Taken together, the proposed imaging technology will make it possible to investigate how the activity of a few cells contributes to global behaviour, and vice versa, observing several measurable variables simultaneously. The new imaging system can be applied to studies, both within and outside bio-medical research, targeting a wide range of problems that, until now, were experimentally inaccessible.

Committee	Closed Committee - Engineering & Biological Systems (EBS)
Research Topics	Technology and Methods Development
Research Priority	X – Research Priority information not available
Research Initiative	Technology Development Initiative 2 (TDRI2) [2007]
Funding Scheme	X – not Funded via a specific Funding Scheme

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