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Sox gene function in Drosophila testis development

Reference	BB/E015492/1
Principal Investigator / Supervisor	Professor Steven Russell
Co-Investigators / Co-Supervisors
Institution	University of Cambridge
Department	Genetics
Funding type	Research
Value (£)	453,140
Status	Completed
Type	Research Grant
Start date	01/03/2007
End date	28/02/2010
Duration	36 months

Abstract

We will undertake a developmental and genomic analysis of the role of the conserved transcriptional regulator, Sox100B, in Drosophila testis development. Building upon pilot studies that have generated a deletion of Sox100B along with a series of EMS-induced point alleles, we will characterise the genetic interactions and cell types that underpin the function of Sox100B in the pupal development of the testis. We will characterise the interactions between Sox100B, wnt2 and two DMRT-domain genes by a developmental analysis of gonad morphogenesis, focusing on the somatic pigment cells of the testis. All three of these proteins have mammalian orthologues that are known to play roles in mammalian testis differentiation or function. Our analysis will explore whether molecular interactions regulating the differentiation of somatic cells in the testis are conserved. Complementing the developmental analysis, we will utilise key genomics technologies we have developed to generate a genome-wide view of Sox100B activity in the developing testis. We will utilise full-transcriptome expression arrays to identify genes expressed in the somatic component of the testis that are mis-regulated in the absence of Sox100B. To facilitate the identification of in vivo Sox100B target genes, we will perform a whole-genome ChIP-on-chip analysis of Sox100B binding using chromatin isolated from developing testes. These genomics techniques are well established in our laboratory and the pilot data presented in this application demonstrate the feasibility of the approaches we propose. Taken together our analysis will identify a set of genes regulated by Sox100B in the somatic cells of the Drosophila testis. An informatics analysis of the targets will identify mammalian orthologues expressed in the testis that are likely to be targets of the key sex-determining gene, Sox9.

Summary

In humans, the sex of the developing embryo is determined by the activity of a regulatory protein encoded on the Y-chromosome, SRY. One of the roles of SRY is to initiate a program of gene expression in the early gonad that directs cells down the male pathway of development. While the activity of SRY and the complete repertoire of target genes it regulates in still unknown, one of its targets is the related regulatory protein SOX9. Several studies have shown that SOX9 alone is able to direct male differentiation of early gonads in mammals. In reptiles, Sox9 has a role to play in the correct development of the testis. Recently, we identified a Drosophila gene related to Sox9 (Sox100B) that shows specific expression in the developing fly testis. More remarkably, we have shown that mutations in the fly gene lead to a failure in testis development. Thus, while the molecular mechanisms that determine sex appear to be completely different in multicellar organisms, it appears that there may be underlying conservation of the genes regulating testis development. Since specifying a testis is the key event in mammalian sex determination, it is possible that an analysis of Sox100B activity in flies will lead to insights into the molecular events underlying human sex determination and testis biology in general. We will take advantage of several approaches we have developed that allow a global analysis of regulatory protein activity in the fly. Using a technique known as DNA microarray analysis, we are able to examine all of the genes in the fly genome simultaneously. By comparing normal flies with Sox100B mutants we can define the set of genes that are down or up regulated because of the loss of Sox100B. Preliminary experiments we have performed indicate that this approach is feasible and that it can identify fly genes with relatives that are expressed in the mammalian testis, suggesting we can identify human genes that may be targets of Sox9. However, one of the problems associated with microarray analysis in multicellular organisms is that it is not always straightforward to related changes in gene expression with the direct activity of a particular regulator. To circumvent this we will use a method we have recently developed to determine where the Sox100B protein is bound in the fly genome during testis development. By fixing developing testes with cross-linking agents, we can 'glue' Sox100B to the DNA while it is active during the regulation of specific genes. We can isolate the DNA with Sox100B attached and identify where in the fly genome it comes from using microarrays containing probes for the entire fly genome. Combined with the microarray expression analysis this will definitively identify a set of genes that Sox100B is regulating in the developing testis. Our analysis of defects in fly testes due to loss of Sox100B combined with the approaches to accurately define Sox100B target genes, will provide a very detailed understanding of the function of Sox100B. This in turn may help to identify potential targets of Sox9, candidate genes implicated in Sex determination and male infertility, in the human genome. Such studies in model systems such as Drosophila are very valuable in helping us understand how the human genome is organised and expressed. While it may appear that flies and humans are very different, years of molecular and genetic analysis have shown that genes which direct key developmental processes in the fly have relatives that perform similar jobs in mammals. Since the fly genome is considerably smaller, and therefore much easier to deal with experimentally than human or mouse, we can use the fly to discover genes and pathways that will benefit from a focused analysis in mammals. The genome-wide based approaches we propose offer an unparalleled opportunity to explore conserved a regulatory protein.

Committee	Closed Committee - Genes & Developmental Biology (GDB)
Research Topics	X – not assigned to a current Research Topic
Research Priority	X – Research Priority information not available
Research Initiative	X - not in an Initiative
Funding Scheme	X – not Funded via a specific Funding Scheme

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